Package: bumblebee
Title: Quantify Disease Transmission Within and Between Population
        Groups
Version: 0.1.0
Authors@R: c(
    person("Lerato E", "Magosi", email = "lmagosi@hsph.harvard.edu",
        role = "aut", comment = c(ORCID = "0000-0002-3388-9892")),
    person("Marc", "Lipsitch", email = "mlipsitc@hsph.harvard.edu", 
        role = "aut"), 
    person("Lerato E", "Magosi", email = "magosil86@gmail.com", 
        role = "cre"))
Description: A simple tool to quantify the amount of transmission of an
        infectious disease of interest occurring within and between
        population groups. 'bumblebee' uses counts of observed directed
        transmission pairs, identified phylogenetically from
        deep-sequence data or from epidemiological contacts, to
        quantify transmission flows within and between population
        groups accounting for sampling heterogeneity. Population groups
        might include: geographical areas (e.g. communities, regions),
        demographic groups (e.g. age, gender) or arms of a randomized
        clinical trial. See the 'bumblebee' website for statistical
        theory, documentation and examples
        <https://magosil86.github.io/bumblebee/>.
License: MIT + file LICENSE
URL: https://magosil86.github.io/bumblebee/
BugReports: https://github.com/magosil86/bumblebee/issues
LazyData: true
Depends: R (>= 2.10)
Imports: dplyr (>= 1.0.2), gtools (>= 3.8.2), Hmisc (>= 4.4-2),
        magrittr (>= 2.0.1), rmarkdown (>= 2.6)
Suggests: covr (>= 3.5.1), knitr (>= 1.30), markdown (>= 1.1), testthat
        (>= 3.0.1)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev
Repository: https://magosil86.r-universe.dev
Date/Publication: 2022-02-27 21:36:35 UTC
RemoteUrl: https://github.com/magosil86/bumblebee
RemoteRef: HEAD
RemoteSha: e44b55de833780defd37c81d2bb94f65ed1dff12
NeedsCompilation: no
Packaged: 2026-10-03 08:17:12 UTC; root
Author: Lerato E Magosi [aut] (ORCID: <https://orcid.org/0000-0002-3388-9892>),
  Marc Lipsitch [aut],
  Lerato E Magosi [cre]
Maintainer: Lerato E Magosi <magosil86@gmail.com>